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Year: 2024

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Macinchem Blog

ChemDoodle updated

23 January 202423 January 2024 chris

Version 12.4.0 is a feature update for ChemDoodle 2D. Included is significant work on IUPAC naming output, support for atropisomer stereochemistry, improved and adjustable crosshair

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Hints and Tutorials Jupyter Notebook Macinchem Blog

Another PDB tools Jupyter Notebook

22 January 202422 January 2024 chris

The Protein Data Bank (https://www.rcsb.org) is an invaluable repository of 3D biomolecular structures. As of writing the database contains 214,791 structures (X-ray, Cryo-EM and NMR)

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Hints and Tutorials Jupyter Notebook

Getting Ligand ID for multiple PDB files

21 January 202422 January 2024 chris

The Protein Data Bank (https://www.rcsb.org) is an invaluable repository of 3D biomolecular structures. As of writing the database contains 214,791 structures (X-ray, Cryo-EM and NMR)

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Macinchem Blog

Macintosh at 40.

19 January 202420 January 2024 chris

40 years ago Apple promised that 1984 would not be like “1984” with a stunning Super Bowl ad created by Ridley Scott.

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Uncategorised

Apple Vision Pro is almost here

18 January 202420 January 2024 chris

I’m sure everyone is aware the Apple Vision Pro is about to be released, out of curiosity anyone planning any scientific apps using the Vision

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Macinchem Blog Science Apps

Matched molecular pair database mmpdb 3.1 released

12 January 202412 January 2024 chris

mmpdb 3.0, released May 2023, merged three development tracks: – create and query 1-cut med chem transformations as described in Awale et al., The Playbooks

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Macinchem Blog Science Apps

BBEdit 15 released

11 January 202411 January 2024 chris

BBEdit is my favourite text editor, of lost count of the times I’ve used it to “Zap Gremlins” to remove non-Ascii characters that were invisible

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Macinchem Blog

CICAG Newsletter

9 January 20249 January 2024 chris

As some may know the Chemical Information and Computer Applications Group (CICAG) produce a twice a year newsletter. The latest version is now available online.

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Macinchem Blog Science Apps Uncategorised

Pistachio updated

4 January 20244 January 2024 chris

Pistachio is a reaction dataset and interface providing loading, querying, and analytics of chemical reactions. The reaction data has been obtained from an ELN export,

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Macinchem Blog Uncategorised

We had a bit of rain overnight.

3 January 20243 January 2024 chris
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Posts pagination

Previous 1 … 9 10 11 Next

  • View post by on Bluesky

    @macinchem.bsky.social 2 days

    Burette Updated

    Burette is a macOS desktop app and Quick Look extension for molecular previews: Mol* 3D, xyzrender SVG, and RDKit grids. There is a review of Burette here it can...
  • View post by on Bluesky

    @macinchem.bsky.social 3 days

    Avogadro Updated

    Avogadro is an advanced open source molecular editor and visualization tool. Download and installation instructions are here...
  • View post by on Bluesky

    @macinchem.bsky.social 5 days

    OpenBind Blind Challenge: Zika virus NS2B-NS3 protease

    On October 14th the OpenBind Blind Challenge was launched, the target is the Zika virus NS2B-NS3 protease. This challenge focuses on predicting how...
  • View post by on Bluesky

    @macinchem.bsky.social 2 weeks

    An Updated Jupyter Notebook for docking

    In 2020 as a result of lockdown I was asked to help create a course for MRes students as an introduction to computer-aided drug design [DOI] that they all...
  • View post by on Bluesky

    @macinchem.bsky.social 2 weeks

    Icms2yield AI-Predicted Full-Spectrum UV Correction Factors: An Analyte-Standard-Free Framework for Reaction Yield Quantification

    https://macinchem.org/2026/10/13/icms2yield-ai-predicted-full-spectrum-uv-correction-factors-an-analyte-standard-free-framework-for-reaction-yield-quantification/
Last updated 10 minutes ago

Recent Posts

  • Burette Updated
  • Avogadro Updated
  • OpenBind Blind Challenge: Zika virus NS2B-NS3 protease
  • An Updated Jupyter Notebook for docking
  • Icms2yield AI-Predicted Full-Spectrum UV Correction Factors: An Analyte-Standard-Free Framework for Reaction Yield Quantification
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  • Burette Updated
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  • OpenBind Blind Challenge: Zika virus NS2B-NS3 protease
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  • Icms2yield AI-Predicted Full-Spectrum UV Correction Factors: An Analyte-Standard-Free Framework for Reaction Yield Quantification
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