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Month: October 2026

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Macinchem Blog Science Apps

Burette Updated

24 October 202624 October 2026 chris

Burette is a macOS desktop app and Quick Look extension for molecular previews: Mol* 3D, xyzrender SVG, and RDKit grids. There is a review of

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Macinchem Blog Science Apps

Avogadro Updated

23 October 202623 October 2026 chris

Avogadro is an advanced open source molecular editor and visualization tool. Download and installation instructions are here https://avogadro.cc/install/index.html

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Hints and Tutorials Jupyter Notebook Macinchem Blog

OpenBind Blind Challenge: Zika virus NS2B-NS3 protease

22 October 202622 October 2026 chris

On October 14th the OpenBind Blind Challenge was launched, the target is the Zika virus NS2B-NS3 protease. This challenge focuses on predicting how small molecules

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Hints and Tutorials Jupyter Notebook Macinchem Blog Science Apps

An Updated Jupyter Notebook for docking

15 October 202615 October 2026 chris

In 2020 as a result of lockdown I was asked to help create a course for MRes students as an introduction to computer-aided drug design

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Data Analysis Tools Macinchem Blog Other Tips

Icms2yield AI-Predicted Full-Spectrum UV Correction Factors: An Analyte-Standard-Free Framework for Reaction Yield Quantification

13 October 202613 October 2026 chris

This looks interesting, High-throughput experimentation (HTE) accelerates molecular discovery but struggles to quantify yields without pure analyte standards. The current need to purify standards increases

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Extensions Macinchem Blog Science Apps

Compound Lookup Extensions

11 October 202611 October 2026 chris

I just noticed that the Compound Lookup extensions have been downloaded over 100 times (Safari + Chrome) and I’ve received some positive feedback.. I’m delighted

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Hints and Tutorials Macinchem Blog Science Apps

Building QupKake on Apple Silicon (macOS arm64)

10 October 202610 October 2026 chris

QupKake predicts micro-pKa values with GFN2-xTB plus graph neural networks. Its README targets Linux. On an Apple Silicon Mac the obvious routes all fail: This

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Hints and Tutorials Macinchem Blog

A collection of Python scripts for PyMOL

9 October 20269 October 2026 chris

Jeremy Tame recently mentioned a python script to produce clickable Ramachandran plots, code is available on GitHub https://github.com/JezTame/pymol-rama His website also describes several other useful

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Macinchem Blog Uncategorised

Frontier AI: SME Champions, phase 1

6 October 20266 October 2026 chris

UK registered micro, small or medium sized enterprise (SMEs) can apply for a share of up to £3.1 million to deliver feasibility studies for frontier

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Data Analysis Tools Hints and Tutorials Macinchem Blog

Clustering

1 October 20261 October 2026 chris

Clustering is an invaluable cheminformatics technique for subdividing a typically large compound collection into small groups of similar compounds. One of the advantages is that

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    @macinchem.bsky.social 2 days

    Vibe-coding: Structure Lens

    Nathan Brown posted an interesting snippet on LinkedIn I vibe-coded a chemistry app last weekend. It started as a curiosity, but it’s turned out to be a useful little...
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    @macinchem.bsky.social 4 days

    VIBE-QC: an open-source, general-purpose electronic-structure code

    Another example of vibe-coded chemistry software. We present VIBE-QC, a general-purpose open-source electronic-structure code...

    https://macinchem.org/2026/11/10/vibe-qc-an-open-source-general-purpose-electronic-structure-code/
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    @macinchem.bsky.social 5 days

    ChemDoodle 3D updated

    iChemLabs have just announced a version 8 of ChemDoodle 3D software. This update is free for all ChemDoodle subscriptions, Lifetime and Site licenses. Licenses are as little as $29,...

    https://macinchem.org/2026/11/09/chemdoodle-3d-updated/
  • View post by on Bluesky

    @macinchem.bsky.social 5 days

    More on web browser extensions

    I recently published two Compound Lookup extensions for Safari and Chrome both of which have been downloaded over 100 times. They allow you so select a drug name in...
  • View post by on Bluesky

    @macinchem.bsky.social 2 weeks

    Cambridge Cheminformatics Network meeting

    The next Cambridge Cheminformatics Network Meeting is 11 November 2026, 4pm UK time at Cambridge Crystallographic Data Centre, Cambridge, UK and Online (Hybrid...
Last updated 10 minutes ago

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  • ChemDoodle 3D updated
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