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Year: 2023

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Reviews Science Apps Software Reviews

A review of FAst MEtabolizer 2 (FAME2)

11 March 202325 May 2023 chris

Whilst much computational work is undertaken to support, library design, virtual screening, hit selection and affinity optimisation the reality is that the most challenging issues

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Reviews Science Apps Software Reviews

A review of FAst MEtabolizer (FAME)

11 March 20237 May 2023 chris

Whilst much computational work is undertaken to support, library design, virtual screening, hit selection and affinity optimisation the reality is that the most challenging issues

Read More
Data Analysis Tools Reviews Science Apps Software Reviews

Application Review: DataGraph (formally known is DataPlot)

11 March 20237 May 2023 chris

At the recent WWDC 2006 there was a discussion about the need for a simple 2D plotting tool, David Adalsteinsson the author of the scientific

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Reviews Science Apps Software Reviews

A quick look at CypReact

11 March 202311 May 2023 chris

A recent publication described CypReact: A Software Tool for in Silico Reactant Prediction for Human Cytochrome P450 Enzymes DOI. There are a number of tools that

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Hints and Tutorials Vortex Scripts

Generating IUPAC names for molecules

11 March 202326 October 2023 chris

I was recently asked if I could generate IUPAC names for a series of molecules for a patent filing. There are many chemical drawing packages

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Hints and Tutorials Vortex Scripts

Using JDBC Driver to access Athena from Vortex

11 March 202312 May 2023 chris

This tutorial was created by Jackson Pullman (jackson.pullman@yale.edu) Getting Started Amazon Athena is an interactive query service that makes it easy to analyze data in Amazon

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Hints and Tutorials Vortex Scripts

A collection of Vortex scripts to aid cluster analysis

11 March 202310 April 2023 chris

Exploration and sorting large datasets of molecules often involves the use of clustering techniques to group together molecules with similar properties. It can be used

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Hints and Tutorials Vortex Scripts

A Vortex script to calculate the Blood-Brain Barrier (BBB) SCORE

11 March 20234 January 2024 chris

A recent publication described “The Blood–Brain Barrier (BBB) Score” DOI a scoring function to determine the likelihood of a molecule being brain penetrant. The blood–brain barrier (BBB)

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Hints and Tutorials Vortex Scripts

Vortex script to determine the Amino Acids in a collection of peptides

11 March 202312 November 2024 chris

I’ve recently become interested the comparison of the amino amino-acid composition of peptides, to allow comparison of cyclic versus linear peptides, or brain penetrant verses

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Hints and Tutorials Vortex Scripts

Vortex script to count Identical structures in two datasets

11 March 202315 April 2023 chris

Sometimes I have two datasets and I just want to know the overlap of identical structures. This script counts the number of identical structures by

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  • View post by on Bluesky

    @macinchem.bsky.social 2 days

    RSC CICAG Chemical Structure Representations Meeting 2026
    Burlington House, London, UK
    Wednesday 8th April
    registrations.hg3conferences.co.uk/hg3/frontend...
    Fabulous line up of speakers.
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    @macinchem.bsky.social 3 days

    Uniprot ID to target name and bio activities

    Sometimes target identification studies can just turn up a list of Uniprot IDs, whilst there are a number of places you can go to find out more information I...
  • View post by on Bluesky

    @macinchem.bsky.social 5 days

    WWDC26

    Apple have announced that WWDC26 will take place on June 8-12, 2026. You can follow on the Apple Developer app, Apple website, and YouTube channel....
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    @macinchem.bsky.social 1 week

    Running Qwen3.5-397B on a M3 MacBook Pro

    A while back Apple published a paper entitled LLM in a flash: Efficient Large Language Model Inference with Limited Memory [DOI] This paper tackles the challenge of...

    https://macinchem.org/2026/03/22/running-qwen3-5-397b-on-a-m3-macbook-pro/
  • View post by on Bluesky

    @macinchem.bsky.social 2 weeks

    RSC CICAG Chemical Structure Representations Meeting 2026 

    This meeting will be held at Burlington House, London, UK on Wednesday 8th April 2026. A one-day conference on Chemical Structure...
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