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Author: chris

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Macinchem Blog Science Apps

UCSF ChimeraX version 1.12 has been released

14 June 202614 June 2026 chris

The latest update of the popular Biomolecular visualisation tool ChimeraX has been released, including some exciting new features, https://www.rbvi.ucsf.edu/chimerax/download.html This update includes – OpenFold3 structure

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Macinchem Blog Science Apps

PyChem-Pro

11 June 202611 June 2026 chris

I just stumbled across this when looking for something else. It looks very interesting A pure-Python desktop application and library for chemistry and cheminformatics —

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Hints and Tutorials Macinchem Blog Other Tips

MOE update and window management

10 June 202610 June 2026 chris

For a long time the computational chemistry and molecular modelling package MOE from Chemical Computing Group has required XQuartz to provide the windowing environment. With

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Macinchem Blog

AIRR compute opportunity: AI open access

4 June 20264 June 2026 chris

This opportunity is open to UK-based researchers and artificial intelligence (AI) developers from academia, industry, public sector or other organisations. This funding opportunity offers compute

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Macinchem Blog

ChEMBL 37 is out

30 May 202630 May 2026 chris

The latest update of the ChEMBL database is out. There are now nearly 3 million structures, 2 million assays covering over 18,000 targets. One of

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Macinchem Blog meetings

9th Artificial Intelligence in Chemistry Symposium

28 May 202628 May 2026 chris

When Nathan Brown and I first discussed a proposed Artificial Intelligence in Chemistry meeting a decade ago we were concerned that the event might not

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Data Analysis Tools Hints and Tutorials Macinchem Blog

TabPFN-3: Technical Report

18 May 202618 May 2026 chris

I’ve written about TabPFN previously https://macinchem.org/2025/02/06/looking-at-tabpfn/ and I see a technical report has just been published. https://priorlabs.ai/technical-reports/tabpfn-3 TabPFN is a foundation model  trained on around 130,000,000

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Hints and Tutorials Macinchem Blog

Building a 3D Pharmacophore Model from PDB Data: A free Python Workflow

16 May 202616 May 2026 chris

https://www.linkedin.com/feed/update/urn:li:activity:7461059877155631105 A fantastic step-by-step breakdown of an example Python pipeline used to build a ligand-based 3D pharmacophore model using free, open-source tools.

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Macinchem Blog

September Meetings

11 May 202611 May 2026 chris

If you are coming to the 9th RSC-CICAG / RSC-BMCS Artificial Intelligence in Chemistry meeting in Cambridge 2-4 September 2026. You might also be interested

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Macinchem Blog

OpenBind’s First Data and Model Release

7 May 20267 May 2026 chris

Lack of data has hampered the building of models to accurately predict binding affinity so I’m sure everyone is super excited to see the first

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Posts pagination

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    @macinchem.bsky.social 2 days

    Compound Lookup Extensions

    I just noticed that the Compound Lookup extensions have been downloaded over 100 times (Safari + Chrome) and I've received some positive feedback.. I'm delighted that such a niche...

    https://macinchem.org/2026/10/11/compound-lookup-extensions/
  • View post by on Bluesky

    @macinchem.bsky.social 3 days

    Building QupKake on Apple Silicon (macOS arm64)

    QupKake predicts micro-pKa values with GFN2-xTB plus graph neural networks. Its README targets Linux. On an Apple Silicon Mac the obvious routes all fail: The...

    https://macinchem.org/2026/10/10/building-qupkake-on-apple-silicon-macos-arm64/
  • View post by on Bluesky

    @macinchem.bsky.social 4 days

    A collection of Python scripts for PyMOL

    Jeremy Tame recently mentioned a python script to produce clickable Ramachandran plots, code is available on GitHub https://github.com/JezTame/pymol-rama His website also...
  • View post by on Bluesky

    @macinchem.bsky.social 4 days

    The latest session in the BMCS Hot Topics online meeting is entitled "AI in Drug Discovery" and has a fantastic lineup of speakers. Registration is open cambridgemedchemconsulting.com/2026/10/09/a...
  • View post by on Bluesky

    @macinchem.bsky.social 6 days

    BMCS New Approaches to Neurodegenerative Diseases cambridgemedchemconsulting.com/2026/10/07/b...
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