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Author: chris

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Macinchem Blog

Open source Cheminformatics toolkits

15 July 202315 July 2023 chris

I have updated the page list open source cheminformatics toolkits. To date it includes:- OpenBabel (http://openbabel.org/wiki/Main_Page) RDKit (http://www.rdkit.org) CDK (https://cdk.github.io) Indigo (http://lifescience.opensource.epam.com/indigo/) OpenChemLib (https://github.com/Actelion/openchemlib/) ChemDoodle

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Macinchem Blog

Summer 2023 CICAG newsletter

12 July 202312 July 2023 chris

The latest Royal Society of Chemistry Chemical Information and Computer Applications interest group (http://www.rsccicag.org) newsletter is now available. It can be found on the CICAG

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Macinchem Blog

Mac market share

11 July 202311 July 2023 chris

Just looking at the desktop market share over on statcounter. https://gs.statcounter.com/os-market-share/desktop/worldwide The MacOS market share seems to be steadily increasing, is this an Apple Silicon

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Macinchem Blog Science Apps

alvaBuilder

5 July 20235 July 2023 chris

AlvaBuilder is a software tool for de novo molecular design (Mauri, A., Bertola, M. (2023). AlvaBuilder: A Software for De Novo Molecular Design. https://doi.org/10.1021/acs.jcim.3c00610; Mauri, A.,

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Macinchem Blog Science Apps

BioSimSpace and Sire 2023.3.0 released

4 July 20234 July 2023 chris

New features include support for alchemical absolute binding free energies, full trajectory read, write and editing support, search by smiles and smarts, complete units grammar

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Macinchem Blog

CAS SciFinderⁿ updated

29 June 202329 June 2023 chris

Full details of the update are here. Includes updates to Knowledge Graph, GHS Data, and new filters

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Fortran on a Mac Macinchem Blog

Enabling Fortran Standard Parallelism in GAMESS for Accelerated Quantum Chemistry Calculations

22 June 202322 June 2023 chris

There is always an uptick of views every time there is a mention of Fortran so I thought I’d highlight this publication DOI. The performance

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Macinchem Blog

Which Mac to buy June 2023?

6 June 20236 June 2023 chris

I’m looking to upgrade my old cylindrical MacPro and I was waiting for WWDC23 to see what the Pro line might have to offer and

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Macinchem Blog

Chances are you’ve heard about Mastodon

2 June 20232 June 2023 chris

The fast-growing social network that offers much of what you love (following friends and interesting people) while skipping many of the things you don’t (such

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Macinchem Blog

7 June 2023 Cambridge Cheminformatics Network Meeting

30 May 202330 May 2023 chris

In person at the Cambridge Crystallographic Data Centre on Union Road, Cambridge. 7 June 2023, 4-5.30pm UK time. Social event afterwards at the Alma.Registration (for Zoom

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  • View post by on Bluesky

    @macinchem.bsky.social 1 day

    Generation of MedChem-similar Molecules

    A recent paper on ChemRxiv https://chemrxiv.org/doi/10.26434/chemrxiv-2025-9c1v6 describes ANNalog a transformer-based sequence-to-sequence generative model trained on pairs of...

    https://macinchem.org/2026/04/17/generation-of-medchem-similar-molecules/
  • View post by on Bluesky

    @macinchem.bsky.social 3 days

    A few upcoming meetings that may be of interest

    Cambridge Cheminformatics Meeting Cambridge Cheminformatics Meeting, 22 April 2026 *** AI Agents for Omics *** Chemical Space Docking for Billion-Sized Libraries...

    https://macinchem.org/2026/04/15/a-few-upcoming-meetings-that-may-be-of-interest/
  • View post by on Bluesky

    @macinchem.bsky.social 4 days

    iNMR updated 7.1.1 released

    iNMR is a fantastic app for NMR spectroscopy, it has been around for over 20 years and gets better with every release. It has been compiled for the Apple...

    https://macinchem.org/2026/04/14/inmr-updated-7-1-1-released/
  • View post by on Bluesky

    @macinchem.bsky.social 1 week

    Cambridge Cheminformatics Network Meeting

    Cambridge Cheminformatics Meeting, 22 April 2026 *** AI Agents for Omics *** Chemical Space Docking for Billion-Sized Libraries *** Quantum Chemistry for Protein-Ligand...
  • View post by on Bluesky

    @macinchem.bsky.social 1 week

    mlxmolkit — GPU-accelerated molecular toolkit on Apple Silicon

    I've previously written about mlxmolkit in particular for clustering where see a 40-fold improvement in speed. The toolkit has now...

    https://macinchem.org/2026/04/08/mlxmolkit-gpu-accelerated-molecular-toolkit-on-apple-silicon/

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  • Generation of MedChem-similar Molecules
  • A few upcoming meetings that may be of interest
  • iNMR updated 7.1.1 released
  • Cambridge Cheminformatics Network Meeting
  • mlxmolkit — GPU-accelerated molecular toolkit on Apple Silicon
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