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Category: Science Apps

Finding scientific applications has always been a little hit and miss since there is no “science” category on the iTunes store. To help out I’ve created a database listing applications that I knew about

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Macinchem Blog Science Apps

Burette Updated

24 October 202624 October 2026 chris

Burette is a macOS desktop app and Quick Look extension for molecular previews: Mol* 3D, xyzrender SVG, and RDKit grids. There is a review of

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Macinchem Blog Science Apps

Avogadro Updated

23 October 202623 October 2026 chris

Avogadro is an advanced open source molecular editor and visualization tool. Download and installation instructions are here https://avogadro.cc/install/index.html

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Hints and Tutorials Jupyter Notebook Macinchem Blog Science Apps

An Updated Jupyter Notebook for docking

15 October 202615 October 2026 chris

In 2020 as a result of lockdown I was asked to help create a course for MRes students as an introduction to computer-aided drug design

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Extensions Macinchem Blog Science Apps

Compound Lookup Extensions

11 October 202611 October 2026 chris

I just noticed that the Compound Lookup extensions have been downloaded over 100 times (Safari + Chrome) and I’ve received some positive feedback.. I’m delighted

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Hints and Tutorials Macinchem Blog Science Apps

Building QupKake on Apple Silicon (macOS arm64)

10 October 202610 October 2026 chris

QupKake predicts micro-pKa values with GFN2-xTB plus graph neural networks. Its README targets Linux. On an Apple Silicon Mac the obvious routes all fail: This

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Extensions Hints and Tutorials Macinchem Blog Science Apps

Google Chrome Extension

29 September 20262 October 2026 chris

This a Google Chrome Extension, it allows you so select a drug name in a web page (for example), right-click and from the dropdown menu

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Extensions Macinchem Blog Science Apps

Safari Extension

29 September 202629 September 2026 chris

This a Safari Extension, it allows you so select a drug name in a web page (for example), right-click and from the dropdown menu there

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Macinchem Blog Other Tips Science Apps

mlxmolkit updated

23 September 202623 September 2026 chris

mlxmolkit is a GPU-accelerated molecular toolkit using MLX on Apple Silicon, it is a port of nvMolKit that uses Cuda. It now includes Area What

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Macinchem Blog Science Apps

ChemDoodle Update

20 September 202620 September 2026 chris

ChemDoodle 2D has been updated. The main focus is expanded support for inorganic compounds and complexes, including haptic bonds and multi-center attachments, their use in

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Macinchem Blog Science Apps

AlvaSketcher

12 September 202624 September 2026 chris

There are a number of chemical drawing packages around that range from lightweight apps for providing structure input to database searches to large fully features

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Posts pagination

1 2 … 18 Next

  • View post by on Bluesky

    @macinchem.bsky.social 5 days

    Burette Updated

    Burette is a macOS desktop app and Quick Look extension for molecular previews: Mol* 3D, xyzrender SVG, and RDKit grids. There is a review of Burette here it can...
  • View post by on Bluesky

    @macinchem.bsky.social 6 days

    Avogadro Updated

    Avogadro is an advanced open source molecular editor and visualization tool. Download and installation instructions are here...
  • View post by on Bluesky

    @macinchem.bsky.social 1 week

    OpenBind Blind Challenge: Zika virus NS2B-NS3 protease

    On October 14th the OpenBind Blind Challenge was launched, the target is the Zika virus NS2B-NS3 protease. This challenge focuses on predicting how...
  • View post by on Bluesky

    @macinchem.bsky.social 2 weeks

    An Updated Jupyter Notebook for docking

    In 2020 as a result of lockdown I was asked to help create a course for MRes students as an introduction to computer-aided drug design [DOI] that they all...
  • View post by on Bluesky

    @macinchem.bsky.social 2 weeks

    Icms2yield AI-Predicted Full-Spectrum UV Correction Factors: An Analyte-Standard-Free Framework for Reaction Yield Quantification

    https://macinchem.org/2026/10/13/icms2yield-ai-predicted-full-spectrum-uv-correction-factors-an-analyte-standard-free-framework-for-reaction-yield-quantification/

Recent Posts

  • Burette Updated
  • Avogadro Updated
  • OpenBind Blind Challenge: Zika virus NS2B-NS3 protease
  • An Updated Jupyter Notebook for docking
  • Icms2yield AI-Predicted Full-Spectrum UV Correction Factors: An Analyte-Standard-Free Framework for Reaction Yield Quantification
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