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Month: May 2025

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Macinchem Blog

Open Molecules 2025 (OMol25)

25 May 202525 May 2025 chris

Open Molecules 2025 (OMol25), a large-scale dataset composed of more than 100 million density functional theory (DFT) calculations at the ωB97M-V/def2-TZVPD level of theory, representing billions

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Data Analysis Tools Macinchem Blog Science Apps

Datagrok platform

24 May 202524 May 2025 chris

I recently came across the Datagrok platform, whilst it is a data agnostic platform they have a very nice YouTube video covering Cheminformatics. There are

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Macinchem Blog Science Apps

ChemDoodle Web Components v11 is Available

20 May 202520 May 2025 chris

Version 11.0.0 of the ChemDoodle Web Components completes the full removal of jQuery and jQuery UI. All UI elements (buttons, dialogs, etc.) are now built

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Data Analysis Tools Hints and Tutorials Macinchem Blog Vortex Scripts

Vortex script to change display of workspace

18 May 20255 June 2025 chris

Sometimes when you import a dataset into a Vortex workspace the default display can be not ideal. For example I imported this CDK7 dataset from

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Macinchem Blog Science Apps

AMS2025 released

16 May 202516 May 2025 chris

The release notes are here: https://www.scm.com/ams2025, and you can try for yourself (https://www.scm.com/free-trial/)

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Macinchem Blog

Reaction prediction

5 May 20255 May 2025 chris

As a chemist reaction prediction has always been of interest, and I’ve been following the series of articles by Alex Clark with interest. There are

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Macinchem Blog Other Tips

SureChEMBl update

4 May 2025 chris

If you have been trying to access patent data via SureChEMBL recently you will be very aware that the team have been struggling to provide

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Macinchem Blog Science Apps

AmberToolsd25 released

1 May 20251 May 2025 chris

AmberTools25 (released on April 30, 2025) consists of the following major codes: AmberTools25 is available via conda https://ambermd.org/GetAmber.php#ambertools

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    @macinchem.bsky.social 1 day

    Avogadro 2.0.0 released

    Avogadro is a free and open source molecular editor and visualization tool. The new release of Avogadro 2, is a major update, and includes major changes, a revised interface,...
  • View post by on Bluesky

    @macinchem.bsky.social 3 days

    Looking at mlxmolkit — GPU-accelerated molecular clustering on Apple Silicon

    I've written several posts on the various options for clustering molecules...

    https://macinchem.org/2026/04/03/looking-at-mlxmolkit-gpu-accelerated-molecular-clustering-on-apple-silicon/
  • View post by on Bluesky

    @macinchem.bsky.social 5 days

    RSC CICAG Chemical Structure Representations Meeting 2026 

    I've just signed up for the meeting, hope to see you there at Burlington House, London, UK Wednesday 8th April 2026 A one-day conference...

    https://macinchem.org/2026/04/01/rsc-cicag-chemical-structure-representations-meeting-2026-2/
  • View post by on Bluesky

    @macinchem.bsky.social 6 days

    Mole2D molecule drawing package

    Mole2D is a lightweight molecule drawing package written in Python and PyQt6. All code is on GitHub https://github.com/sfmlab/mole2d and it requires RDKit and PyQt6.. PubChem lookup...

    https://macinchem.org/2026/03/31/mole2d-molecule-drawing-package/
  • View post by on Bluesky

    @macinchem.bsky.social 1 week

    RDKit Updated

    An update to RDKit has been released 2026_03_1 (Q1 2026). Highlights A significant number of known SMILES canonicalization problems were resolved. It's now possible to provide your own matching...
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Recent Posts

  • RSC CICAG Chemical Structure Representations Meeting 2026 
  • Avogadro 2.0.0 released
  • Looking at mlxmolkit — GPU-accelerated molecular clustering on Apple Silicon
  • RSC CICAG Chemical Structure Representations Meeting 2026 
  • Mole2D molecule drawing package
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  • RSC CICAG Chemical Structure Representations Meeting 2026 
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  • Mole2D molecule drawing package
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