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Month: May 2025

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Macinchem Blog

Open Molecules 2025 (OMol25)

25 May 202525 May 2025 chris

Open Molecules 2025 (OMol25), a large-scale dataset composed of more than 100 million density functional theory (DFT) calculations at the ωB97M-V/def2-TZVPD level of theory, representing billions

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Data Analysis Tools Macinchem Blog Science Apps

Datagrok platform

24 May 202524 May 2025 chris

I recently came across the Datagrok platform, whilst it is a data agnostic platform they have a very nice YouTube video covering Cheminformatics. There are

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Macinchem Blog Science Apps

ChemDoodle Web Components v11 is Available

20 May 202520 May 2025 chris

Version 11.0.0 of the ChemDoodle Web Components completes the full removal of jQuery and jQuery UI. All UI elements (buttons, dialogs, etc.) are now built

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Data Analysis Tools Hints and Tutorials Macinchem Blog Vortex Scripts

Vortex script to change display of workspace

18 May 20255 June 2025 chris

Sometimes when you import a dataset into a Vortex workspace the default display can be not ideal. For example I imported this CDK7 dataset from

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Macinchem Blog Science Apps

AMS2025 released

16 May 202516 May 2025 chris

The release notes are here: https://www.scm.com/ams2025, and you can try for yourself (https://www.scm.com/free-trial/)

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Macinchem Blog

Reaction prediction

5 May 20255 May 2025 chris

As a chemist reaction prediction has always been of interest, and I’ve been following the series of articles by Alex Clark with interest. There are

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Macinchem Blog Other Tips

SureChEMBl update

4 May 2025 chris

If you have been trying to access patent data via SureChEMBL recently you will be very aware that the team have been struggling to provide

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Macinchem Blog Science Apps

AmberToolsd25 released

1 May 20251 May 2025 chris

AmberTools25 (released on April 30, 2025) consists of the following major codes: AmberTools25 is available via conda https://ambermd.org/GetAmber.php#ambertools

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    @macinchem.bsky.social 2 days

    Vortex script using BioTransformer

    Prediction of the metabolism of small molecules is very challenging and so having a variety of different tools is always useful. I've previously written Vortex scripts to use SMARTCyp...

    Vortex script using BioTransformer

    Prediction of the metabolism of small molecules is very challenging and so having a variety of different tools is always useful. I've previously written Vortex scripts to use SMARTCyp and...

    macinchem.org

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    @macinchem.bsky.social 4 days

    BBEdit updated

    BBEdit everyone's favourite text editor has been updated to 15.5.5 This update contains only fixes for reported symptoms. Please see the release notes for previous versions for details on what is...

    https://macinchem.org/2026/02/20/bbedit-updated/
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    @macinchem.bsky.social 5 days

    AI Club for Biomedicine

    Well it was standing room only at the last nights Cambridge Cheminformatics Network meeting Co-folding special. Many thanks to all the speakers I'm sorry we did not have time...

    https://macinchem.org/2026/02/19/ai-club-for-biomedicine-2/
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    @macinchem.bsky.social 1 week

    Apple Event March 4th 2026

    Apple today announced a "special Apple Experience" in New York, London, and Shanghai, taking place on March 4, 2026 at 9:00am ET. Interesting that it is taking place simultaneously...

    Apple Event March 4th 2026

    Apple today announced a "special Apple Experience" in New York, London, and Shanghai, taking place on March 4, 2026 at 9:00am ET. Interesting that it is taking place simultaneously in...

    macinchem.org

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    @macinchem.bsky.social 1 week

    Grant funded high-throughput screening

    Apply for funding to run a high throughput screen (HTS) using AstraZeneca’s compound library and screening robots. There are two funding opportunities per year that are open to...

    https://macinchem.org/2026/02/16/grant-funded-high-throughput-screening/

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