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Author: chris

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iBabel Macinchem Blog meetings

RSC CICAG Chemical Structure Representations Meeting 2026 

6 April 20266 April 2026 chris

We do have a lot of different molecular file format, from simple line notations like SMILES to cartesian coordinates (.xyz) to .trexio designed to store

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Macinchem Blog Science Apps

Avogadro 2.0.0 released

5 April 20265 April 2026 chris

Avogadro is a free and open source molecular editor and visualization tool. The new release of Avogadro 2, is a major update, and includes major

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Hints and Tutorials Jupyter Notebook Macinchem Blog Science Apps Software Reviews Uncategorised

Looking at mlxmolkit — GPU-accelerated molecular clustering on Apple Silicon

3 April 20265 April 2026 chris

I’ve written several posts on the various options for clustering molecules https://macinchem.org/?s=clustering and a recent post from NVIDIA described GPU-Accelerated Clustering with nvMolKit that uses

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Macinchem Blog meetings

RSC CICAG Chemical Structure Representations Meeting 2026 

1 April 20262 April 2026 chris

I’ve just signed up for the meeting, hope to see you there at Burlington House, London, UK Wednesday 8th April 2026 A one-day conference on Chemical

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Macinchem Blog Science Apps

Mole2D molecule drawing package

31 March 202631 March 2026 chris

Mole2D is a lightweight molecule drawing package written in Python and PyQt6. All code is on GitHub https://github.com/sfmlab/mole2d and it requires RDKit and PyQt6.. PubChem

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Macinchem Blog Other Tips Science Apps

RDKit Updated

28 March 202628 March 2026 chris

An update to RDKit has been released 2026_03_1 (Q1 2026). Highlights Note there are a number of backwards incompatible changes. Full details of the release

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Data Analysis Tools Hints and Tutorials Macinchem Blog Vortex Scripts

Uniprot ID to target name and bio activities

26 March 202626 March 2026 chris

Sometimes target identification studies can just turn up a list of Uniprot IDs, whilst there are a number of places you can go to find

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Macinchem Blog meetings

WWDC26

24 March 202624 March 2026 chris

Apple have announced that WWDC26 will take place on June 8-12, 2026. You can follow on the Apple Developer app, Apple website, and YouTube channel. https://www.youtube.com/@AppleDeveloper

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Macinchem Blog Other Tips

Running Qwen3.5-397B on a M3 MacBook Pro

22 March 202622 March 2026 chris

A while back Apple published a paper entitled LLM in a flash: Efficient Large Language Model Inference with Limited Memory [DOI] This paper tackles the

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Macinchem Blog meetings

RSC CICAG Chemical Structure Representations Meeting 2026 

18 March 20262 April 2026 chris

This meeting will be held at Burlington House, London, UK on Wednesday 8th April 2026. A one-day conference on Chemical Structure Representations will bring together

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Posts pagination

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  • View post by on Bluesky

    @macinchem.bsky.social 2 days

    Avogadro 2.0.0 released

    Avogadro is a free and open source molecular editor and visualization tool. The new release of Avogadro 2, is a major update, and includes major changes, a revised interface,...
  • View post by on Bluesky

    @macinchem.bsky.social 4 days

    Looking at mlxmolkit — GPU-accelerated molecular clustering on Apple Silicon

    I've written several posts on the various options for clustering molecules...

    https://macinchem.org/2026/04/03/looking-at-mlxmolkit-gpu-accelerated-molecular-clustering-on-apple-silicon/
  • View post by on Bluesky

    @macinchem.bsky.social 6 days

    RSC CICAG Chemical Structure Representations Meeting 2026 

    I've just signed up for the meeting, hope to see you there at Burlington House, London, UK Wednesday 8th April 2026 A one-day conference...

    https://macinchem.org/2026/04/01/rsc-cicag-chemical-structure-representations-meeting-2026-2/
  • View post by on Bluesky

    @macinchem.bsky.social 7 days

    Mole2D molecule drawing package

    Mole2D is a lightweight molecule drawing package written in Python and PyQt6. All code is on GitHub https://github.com/sfmlab/mole2d and it requires RDKit and PyQt6.. PubChem lookup...

    https://macinchem.org/2026/03/31/mole2d-molecule-drawing-package/
  • View post by on Bluesky

    @macinchem.bsky.social 1 week

    RDKit Updated

    An update to RDKit has been released 2026_03_1 (Q1 2026). Highlights A significant number of known SMILES canonicalization problems were resolved. It's now possible to provide your own matching...
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Recent Posts

  • RSC CICAG Chemical Structure Representations Meeting 2026 
  • Avogadro 2.0.0 released
  • Looking at mlxmolkit — GPU-accelerated molecular clustering on Apple Silicon
  • RSC CICAG Chemical Structure Representations Meeting 2026 
  • Mole2D molecule drawing package
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  • RSC CICAG Chemical Structure Representations Meeting 2026 
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  • RSC CICAG Chemical Structure Representations Meeting 2026 
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